If you can use powershell.. I would try the below links.

Here is one for hyperV

http://community.netapp.com/t5/Virtualization-and-Cloud-Articles-and-Resources/Data-ONTAP-PowerShell-Toolkit-Check-Hyper-V-disk-alignment/ta-p/84726

May want to check out the word doc.

http://community.netapp.com/t5/Virtualization-and-Cloud-Articles-and-Resources/Data-ONTAP-PowerShell-Toolkit-About-Disk-Alignment/ta-p/86026

Thanks

Steve Klise

Consulting Solutions Architect – Data Center

World Wide Technology Inc.

408-242-4086 Cell

From: RM <RM@richardmay.net>
Date: Thursday, February 19, 2015 at 9:57 AM
To: "toasters@teaparty.net" <toasters@teaparty.net>
Subject: Checking partition alignment of a powered-on VM

Can mbrscan check a powered-on VM? I know it needs to be off to remediate; at this time I only need to *identify* the misaligned VMs.

I can’t see guest VM alignment from the VSC GUI because old version. :-/